APOBEC3B-mediated corruption of the tumor cell immunopeptidome induces heteroclitic neoepitopes for cancer immunotherapy

Nat Commun. 2020 Feb 7;11(1):790. doi: 10.1038/s41467-020-14568-7.

Abstract

APOBEC3B, an anti-viral cytidine deaminase which induces DNA mutations, has been implicated as a mediator of cancer evolution and therapeutic resistance. Mutational plasticity also drives generation of neoepitopes, which prime anti-tumor T cells. Here, we show that overexpression of APOBEC3B in tumors increases resistance to chemotherapy, but simultaneously heightens sensitivity to immune checkpoint blockade in a murine model of melanoma. However, in the vaccine setting, APOBEC3B-mediated mutations reproducibly generate heteroclitic neoepitopes in vaccine cells which activate de novo T cell responses. These cross react against parental, unmodified tumors and lead to a high rate of cures in both subcutaneous and intra-cranial tumor models. Heteroclitic Epitope Activated Therapy (HEAT) dispenses with the need to identify patient specific neoepitopes and tumor reactive T cells ex vivo. Thus, actively driving a high mutational load in tumor cell vaccines increases their immunogenicity to drive anti-tumor therapy in combination with immune checkpoint blockade.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cancer Vaccines / pharmacology*
  • Cell Line, Tumor
  • Cytidine Deaminase / genetics
  • Cytidine Deaminase / immunology*
  • Cytidine Deaminase / metabolism
  • Drug Resistance, Neoplasm
  • Epitopes / immunology
  • Female
  • Humans
  • Immunotherapy / methods*
  • Killer Cells, Natural / immunology
  • Melanoma / immunology
  • Melanoma / therapy
  • Melanoma, Experimental / immunology
  • Melanoma, Experimental / therapy
  • Mice, Inbred C57BL
  • Minor Histocompatibility Antigens / genetics
  • Minor Histocompatibility Antigens / immunology*
  • Minor Histocompatibility Antigens / metabolism
  • Mutation
  • T-Lymphocytes / immunology*
  • Tumor Escape / drug effects

Substances

  • Cancer Vaccines
  • Epitopes
  • Minor Histocompatibility Antigens
  • APOBEC3B protein, human
  • Cytidine Deaminase