Identification of an immune-related risk signature for predicting prognosis in clear cell renal cell carcinoma

Aging (Albany NY). 2020 Feb 6;12(3):2302-2332. doi: 10.18632/aging.102746. Epub 2020 Feb 6.

Abstract

Immune status affects the initiation and progression of clear cell renal cell carcinoma (ccRCC), the most common subtype of renal cell carcinoma. In this study, we identified an immune-related, five-gene signature that improves survival prediction in ccRCC. Patients were classified as high- and low-risk based on the signature risk score. Survival analysis showed differential prognosis, while principal component analysis revealed distinctly different immune phenotypes between the two risk groups. High-risk patients tended to have advanced stage, higher grade disease, and poorer prognoses. Functional enrichment analysis showed that the signature genes were mainly involved in the cytokine-cytokine receptor interaction pathway. Moreover, we found that tumors from high-risk patients had higher relative abundance of T follicular helper cells, regulatory T cells, and M0 macrophages, and higher expression of PD-1, CTLA-4, LAG3, and CD47 than low-risk patients. This suggests our gene signature may not only serve as an indicator of tumor immune status, but may be a promising tool to select high-risk patients who may benefit from immune checkpoint inhibitor therapy. Multivariate Cox regression analysis showed that the signature remained an independent prognostic factor after adjusting for clinicopathological variables, while prognostic accuracy was further improved after integrating clinical parameters into the analysis.

Keywords: clear cell renal cell carcinoma; gene signature; immune-related gene; prognostic model; tumor immunology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Antigens, CD / metabolism
  • CD47 Antigen / metabolism
  • CTLA-4 Antigen / metabolism
  • Carcinoma, Renal Cell / genetics*
  • Carcinoma, Renal Cell / immunology
  • Carcinoma, Renal Cell / metabolism
  • Carcinoma, Renal Cell / pathology
  • Chemokine CXCL5 / genetics*
  • Cytokines / metabolism
  • Female
  • Humans
  • Interferon Regulatory Factor-7 / genetics*
  • Janus Kinase 3 / genetics*
  • Kidney Neoplasms / genetics*
  • Kidney Neoplasms / immunology
  • Kidney Neoplasms / metabolism
  • Kidney Neoplasms / pathology
  • Lymphocyte Activation Gene 3 Protein
  • Macrophages / immunology
  • Male
  • Middle Aged
  • Neoplasm Grading
  • Neoplasm Staging
  • Principal Component Analysis
  • Prognosis
  • Programmed Cell Death 1 Receptor / metabolism
  • Receptors, Cytokine / metabolism
  • Src Homology 2 Domain-Containing, Transforming Protein 1 / genetics*
  • Survival Analysis
  • T-Lymphocytes, Helper-Inducer / immunology
  • T-Lymphocytes, Regulatory / immunology
  • Transcriptome
  • Vascular Endothelial Growth Factor Receptor-2 / genetics*

Substances

  • Antigens, CD
  • CD47 Antigen
  • CD47 protein, human
  • CTLA-4 Antigen
  • CTLA4 protein, human
  • CXCL5 protein, human
  • Chemokine CXCL5
  • Cytokines
  • IRF7 protein, human
  • Interferon Regulatory Factor-7
  • PDCD1 protein, human
  • Programmed Cell Death 1 Receptor
  • Receptors, Cytokine
  • SHC1 protein, human
  • Src Homology 2 Domain-Containing, Transforming Protein 1
  • KDR protein, human
  • Vascular Endothelial Growth Factor Receptor-2
  • JAK3 protein, human
  • Janus Kinase 3
  • Lymphocyte Activation Gene 3 Protein
  • Lag3 protein, human