Whole genome sequencing data of Vigna nakashimae var. Ukushima and G418

Eri Ogiso-Tanaka; Sompong Chankaew; Takehisa Isemura; Alisa Kongjaimun; Akiko Baba; Ken Naito; Akito Kaga; Norihiko Tomooka

doi:10.1016/j.dib.2020.105131

Whole genome sequencing data of Vigna nakashimae var. Ukushima and G418

Data Brief. 2020 Jan 14:29:105131. doi: 10.1016/j.dib.2020.105131. eCollection 2020 Apr.

Authors

Eri Ogiso-Tanaka¹, Sompong Chankaew², Takehisa Isemura¹, Alisa Kongjaimun³, Akiko Baba¹, Ken Naito¹, Akito Kaga¹, Norihiko Tomooka¹

Affiliations

¹ Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
² Program in Plant Breeding, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen, Nakhon Pathom 73140, Thailand.
³ Research Fellow of the Japan Society for the Promotion of Science, Japan.

Abstract

Vigna nakashimae is one of the closely related species of Vigna angularis (Adzuki bean). Two strain of 'Ukushima' and 'G418' were identified as salt tolerance strains in Vigna nakashimae from gene bank collection. F₂ populations from an inter- or intra-specific cross between the sensitive and tolerant strains are useful for the detection of salt tolerance QTL in Vigna nakashimae. Although Vigna angularis reference genome is available and useful for genetic analysis by genotyping-by-sequencing/RADseq in closely related species, it is not enough for isolation of responsible genes. To reveal sequence variation in Vigna nakashimae "Ukushima" and "G418", the whole genome sequencing was performed using Illumina HiSeq X Ten system (411,174,986 and 478,116,282 read). NGS data was deposited in the DNA Data Bank of Japan (DDBJ) under accession number DRA009307.

Keywords: Closely wild relatives of Adzuki bean; HiSeq; Next-generation sequencing; Vigna nakashimae; Whole genome sequencing.