Meiotic gene silencing complex MTREC/NURS recruits the nuclear exosome to YTH-RNA-binding protein Mmi1

PLoS Genet. 2020 Feb 3;16(2):e1008598. doi: 10.1371/journal.pgen.1008598. eCollection 2020 Feb.

Abstract

Accurate target recognition in transcript degradation is crucial for regulation of gene expression. In the fission yeast Schizosaccharomyces pombe, a number of meiotic transcripts are recognized by a YTH-family RNA-binding protein, Mmi1, and selectively degraded by the nuclear exosome during mitotic growth. Mmi1 forms nuclear foci in mitotically growing cells, and the nuclear exosome colocalizes to such foci. However, it remains elusive how Mmi1 and the nuclear exosome are connected. Here, we show that a complex called MTREC (Mtl1-Red1 core) or NURS (nuclear RNA silencing) that consists of a zinc-finger protein, Red1, and an RNA helicase, Mtl1, is required for the recruitment of the nuclear exosome to Mmi1 foci. Physical interaction between Mmi1 and the nuclear exosome depends on Red1. Furthermore, a chimeric protein involving Mmi1 and Rrp6, which is a nuclear-specific component of the exosome, suppresses the ectopic expression phenotype of meiotic transcripts in red1Δ cells and mtl1 mutant cells. These data indicate that the primary function of MTREC/NURS in meiotic transcript elimination is to link Mmi1 to the nuclear exosome physically.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carrier Proteins / metabolism*
  • DEAD-box RNA Helicases / metabolism
  • Exosomes / metabolism*
  • Gene Expression Regulation, Fungal*
  • Meiosis / genetics*
  • RNA Interference*
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Ribonucleases / genetics
  • Ribonucleases / metabolism
  • Schizosaccharomyces pombe Proteins / genetics
  • Schizosaccharomyces pombe Proteins / metabolism*
  • mRNA Cleavage and Polyadenylation Factors / genetics
  • mRNA Cleavage and Polyadenylation Factors / metabolism*

Substances

  • Carrier Proteins
  • Mmi1 protein, S pombe
  • Recombinant Fusion Proteins
  • Red1 protein, S pombe
  • Schizosaccharomyces pombe Proteins
  • mRNA Cleavage and Polyadenylation Factors
  • Ribonucleases
  • Rrp6 protein, S pombe
  • Mtl1 protein, S pombe
  • DEAD-box RNA Helicases

Grants and funding

This work was supported by JSPS (https://www.jsps.go.jp/english/index.html) KAKENHI Grant Number 15H04333 to AY, 19K06649 to YO and a grant from the Naito Foundation (https://www.naito-f.or.jp/en/) to YO. YS is a recipient of a JSPS Research Fellowship (PD) 19J00920. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.