Association between SNPs and Loss of Methylation Site on the CpG island of the Promoter Region of the Smoothened Gene, Potential Molecular Markers for Susceptibility to the Development of Basal Cell Carcinoma in the Brazilian Population

Asian Pac J Cancer Prev. 2020 Jan 1;21(1):25-29. doi: 10.31557/APJCP.2020.21.1.25.

Abstract

Objective: Perform genotyping of SNPs in the promoter region of the SMO gene in BCC samples from patients from northeastern Brazil, and to determine if there is an association of these SNPs of the gene in question with the susceptibility to the development of the BCC.

Methods: 100 samples of paraffined tissue from patients with histopathological diagnosis of BCC and 100 control samples were analyzed for each polymorphism by a newly developed genotyping method, the Dideoxy Single Allele Specific - PCR. The software Bioestat - version 5.3 and Haploview 4.2 were used for the statistical analysis. For all tests a P-value.

Keywords: Basal cell carcinoma; CpG-SNPs; molecular markers e DSAPS; via Hedgehog.

MeSH terms

  • Alleles
  • Biomarkers, Tumor / genetics
  • Brazil
  • Carcinoma, Basal Cell / genetics*
  • CpG Islands / genetics*
  • DNA Methylation / genetics*
  • Genetic Predisposition to Disease / genetics
  • Humans
  • Polymorphism, Single Nucleotide / genetics*
  • Promoter Regions, Genetic / genetics*
  • Retrospective Studies
  • Skin Neoplasms / genetics*
  • Smoothened Receptor / genetics*

Substances

  • Biomarkers, Tumor
  • SMO protein, human
  • Smoothened Receptor