Secondary nucleotide messenger c-di-GMP exerts a global control on natural product biosynthesis in streptomycetes

Nucleic Acids Res. 2020 Feb 20;48(3):1583-1598. doi: 10.1093/nar/gkz1220.

Abstract

Cyclic dimeric 3'-5' guanosine monophosphate, c-di-GMP, is a ubiquitous second messenger controlling diverse cellular processes in bacteria. In streptomycetes, c-di-GMP plays a crucial role in a complex morphological differentiation by modulating an activity of the pleiotropic regulator BldD. Here we report that c-di-GMP plays a key role in regulating secondary metabolite production in streptomycetes by altering the expression levels of bldD. Deletion of cdgB encoding a diguanylate cyclase in Streptomycesghanaensis reduced c-di-GMP levels and the production of the peptidoglycan glycosyltransferase inhibitor moenomycin A. In contrast to the cdgB mutant, inactivation of rmdB, encoding a phosphodiesterase for the c-di-GMP hydrolysis, positively correlated with the c-di-GMP and moenomycin A accumulation. Deletion of bldD adversely affected the synthesis of secondary metabolites in S. ghanaensis, including the production of moenomycin A. The bldD-deficient phenotype is partly mediated by an increase in expression of the pleiotropic regulatory gene wblA. Genetic and biochemical analyses demonstrate that a complex of c-di-GMP and BldD effectively represses transcription of wblA, thus preventing sporogenesis and sustaining antibiotic synthesis. These results show that manipulation of the expression of genes controlling c-di-GMP pool has the potential to improve antibiotic production as well as activate the expression of silent gene clusters.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / antagonists & inhibitors
  • Bacterial Proteins / genetics*
  • Bambermycins / biosynthesis*
  • Biological Products / metabolism*
  • Cyclic GMP / analogs & derivatives*
  • Cyclic GMP / genetics
  • Cyclic GMP / metabolism
  • DNA-Binding Proteins / antagonists & inhibitors
  • DNA-Binding Proteins / genetics*
  • Escherichia coli Proteins / genetics
  • Gene Deletion
  • Gene Expression Regulation, Bacterial / genetics
  • Nucleotides / genetics
  • Peptidoglycan Glycosyltransferase / antagonists & inhibitors
  • Phosphorus-Oxygen Lyases / genetics
  • Second Messenger Systems / genetics
  • Streptomycetaceae / genetics
  • Streptomycetaceae / metabolism
  • Transcription Factors / antagonists & inhibitors
  • Transcription Factors / genetics*

Substances

  • Bacterial Proteins
  • Biological Products
  • BldD protein, Streptomyces coelicolor
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • Nucleotides
  • Transcription Factors
  • Bambermycins
  • moenomycin A
  • bis(3',5')-cyclic diguanylic acid
  • Peptidoglycan Glycosyltransferase
  • Phosphorus-Oxygen Lyases
  • diguanylate cyclase
  • Cyclic GMP