Obstructive Sleep Apnea/Hypopnea Syndrome (OSAHS) is sleep-disordered breathing distinguished by repetitive cessation or reduction of airflow due to the collapse or narrowing of the upper airway during sleep with continued respiratory effort. A high level of incidence of OSAHS is correlated with obesity. Both severely obese patients and OSAHS patients manifest Long QT Syndrome (LQTS). It is reported that most obese patients undergoing weight reduction surgery positively reverse symptoms of LQST. Also, severely obese OSAHS undergoing the same surgery report alleviation of OSAHS symptoms. In this study, we presented preliminary results of the changes in QT and QTc intervals for obese OSAHS patients undergoing Roux-en-Y Gastric Bypass (RYGB) surgery and had their weight reduced, and were treated from OSAHS post-RYGB surgery. We developed an algorithm to detect the different waveforms in the ECG signal and calculated QT and QTc intervals. Results comparing the changes in the QT and QTc pre- and post-RYGB surgery for four apneic subjects (Aged 37.0 ± 8.9 years, Pre-RYGB BMI 51.7 ± 10.1 kg/m2, Post-RYGB BMI 35.6 ± 7.9 kg/m2) were contrasted with a control group of 3 non-apneic subjects (Aged 32.7 ± 7.0 years, Pre-RYGB BMI 50.8 ± 11.8 kg/m2, Post-RYGB BMI 31.6 ± 2.9 kg/m2) who underwent the same surgery. The results suggest that although the RYGB surgery is successful in weight loss and OSAHS symptoms reduction, apneic patients may continue to have non-reversible LQTS despite long-term weight reduction.