Characterization of cold-tolerant trehalose-6-phosphate synthase from the deep-sea bacterium Microbacterium sediminis YLB-01

Biosci Biotechnol Biochem. 2020 May;84(5):954-962. doi: 10.1080/09168451.2020.1713044. Epub 2020 Jan 14.

Abstract

A gene encoding the enzyme trehalose-6-phosphate synthase (TPS), which is part of the TPS trehalose synthesis pathway, was cloned from the deep-sea psychrotolerant bacterium Microbacterium sediminis YLB-01 and expressed in Escherichia coli BL21. The exogenously expressed TPS exhibited highest similarity (80.93% identity) to Microbacterium sp. TPS. The purified recombinant TPS was cold-tolerant, with low thermostability. The optimum temperature for TPS activity was 40°C, and the enzyme retained 72.6% of its maximal activity at 4°C. The optimum pH was 7.5. TPS activity was cation-dependent, with Mg2+, Co2+, or Ba2+ being essential for maximum activity. The kinetic constants of the recombinant TPS reaction rates confirmed that it was cold-tolerant. Molecular dynamics analysis showed that TPS was more flexible (0.8741Å) at 4°C than 1GZ5, its homolog in the mesophilic bacterium E. coli, and superposition of the 3D enzyme structures supported this.

Keywords: Trehalose-6-phosphate synthase; cold tolerance; deep-sea bacterium; molecular dynamics.

MeSH terms

  • Amino Acid Sequence
  • Barium / chemistry
  • Cobalt / chemistry
  • Cold Temperature*
  • Enzyme Stability
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Geologic Sediments / microbiology
  • Glucosyltransferases / chemistry*
  • Glucosyltransferases / genetics*
  • Hydrogen Bonding
  • Hydrogen-Ion Concentration
  • Indian Ocean
  • Ions / chemistry
  • Kinetics
  • Magnesium / chemistry
  • Microbacterium / enzymology
  • Microbacterium / genetics
  • Molecular Dynamics Simulation
  • Phylogeny
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins

Substances

  • Ions
  • Recombinant Proteins
  • Barium
  • Cobalt
  • Glucosyltransferases
  • trehalose-6-phosphate synthase
  • Magnesium

Supplementary concepts

  • Microbacterium sediminis