Kernel density estimates for sepsis classification

Comput Methods Programs Biomed. 2020 May:188:105295. doi: 10.1016/j.cmpb.2019.105295. Epub 2019 Dec 24.

Abstract

Objective: Severe sepsis is a leading cause of intensive care unit (ICU) admission, length of stay, mortality, and cost. systemic inflammatory response syndrome (SIRS) and organ failure due to infection define it, but also make it hard to diagnose. Early diagnosis reduces morbidity, mortality and cost, and diagnosis is often significantly delayed due to a lack of effective biomarkers. This research employs kernel density estimation (KDE) methods fusing a personalized, model-based insulin sensitivity (SI) metric with standard bedside measures of: temperature, heart rate, respiratory rate, systolic and diastolic blood pressure, and SIRS, as these measures are available hourly or more frequently.

Methods: Model-based SI is a derived metric, identified using clinical data and a clinically validated metabolic model. The KDE classifier discriminates severe sepsis and septic shock from moderate sepsis using accepted consensus sepsis scores. A best case in-sample estimate, a worst case independent cross validation estimate, and an accepted .632 bootstrap estimate are calculated to assess performance using multi-level likelihood ratios, and sensitivity and specificity. Performance is assessed against clinically and statistically defined thresholds denoted for the minimum acceptable level as: "high accuracy, often providing useful information, and clinical significance," and similar definitions for greater or lesser quality.

Results: The .632 bootstrap estimate performs near clinically defined levels of high accuracy, often providing useful information, and clinical significance based on sensitivity, specificity, and multilevel likelihood ratios.

Conclusion and significance: The classifier created and this overall approach is useful for clinical decision making in diagnosing severe sepsis and septic shock in real time, for both case and control hours. However, improvements could be made with larger clinical data sets.

Keywords: Classification; Intensive care; Kernel density; Sepsis.

MeSH terms

  • Algorithms
  • Area Under Curve
  • Case-Control Studies
  • Critical Care / methods*
  • Decision Support Systems, Clinical
  • Heart Rate
  • Humans
  • Insulin / metabolism
  • Intensive Care Units*
  • Predictive Value of Tests
  • Probability
  • ROC Curve
  • Reproducibility of Results
  • Respiratory Rate
  • Sensitivity and Specificity
  • Sepsis / diagnosis*
  • Sepsis / physiopathology*
  • Systole
  • Temperature

Substances

  • Insulin