Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W

Natalia E Gogoleva; Tatiana A Konnova; Timur T Ismailov; Alexander S Balkin; Andrey A Belimov; Yuri V Gogolev

doi:10.1016/j.dib.2019.105001

Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W

Data Brief. 2019 Dec 16:28:105001. doi: 10.1016/j.dib.2019.105001. eCollection 2020 Feb.

Authors

Natalia E Gogoleva^{1

2}, Tatiana A Konnova¹, Timur T Ismailov¹, Alexander S Balkin³, Andrey A Belimov⁴, Yuri V Gogolev^{1

2}

Affiliations

¹ Kazan Institute of Biochemistry and Biophysics, Kazan Scientific Center of RAS, 2/31 Lobachevsky St., Kazan 420111, Russian Federation.
² Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 18 Lenina St., Kazan 420021, Russian Federation.
³ Center of Shared Scientific Equipment "Persistence of Microorganisms", Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, Orenburg, Russian Federation.
⁴ All-Russia Research Institute for Agricultural Microbiology, 3 Sh. Podbelskogo St., Saint Petersburg 196608, Russian Federation.

Abstract

Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (ABA) degradation, and its inoculation decreased ABA concentrations in planta. The metabolic pathway for the ABA degradation in bacteria is still unknown. Here we present transcriptome data of Novosphingobium sp. P6W grown in the medium supplemented with ABA or fructose as the carbon source. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP189498) and have been assigned BioProject accession PRJNA529223.

Keywords: Illumina; Novosphingobium sp.; Plant growth-promoting rhizobacteria (PGPR); RNA-seq; Rhizosphere.