Polymorphic Protective Dps-DNA Co-Crystals by Cryo Electron Tomography and Small Angle X-Ray Scattering

Biomolecules. 2019 Dec 26;10(1):39. doi: 10.3390/biom10010039.

Abstract

Rapid increase of intracellular synthesis of specific histone-like Dps protein that binds DNA to protect the genome against deleterious factors leads to in cellulo crystallization-one of the most curious processes in the area of life science at the moment. However, the actual structure of the Dps-DNA co-crystals remained uncertain in the details for more than two decades. Cryo-electron tomography and small-angle X-ray scattering revealed polymorphous modifications of the co-crystals depending on the buffer parameters. Two different types of the Dps-DNA co-crystals are formed in vitro: triclinic and cubic. Three-dimensional reconstruction revealed DNA and Dps molecules in cubic co-crystals, and the unit cell parameters of cubic lattice were determined consistently by both methods.

Keywords: DNA; Dps; biocrystallization; co-crystals; cryo-electron tomography; small-angle X-ray scattering.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Outer Membrane Proteins / chemistry*
  • Crystallography, X-Ray*
  • DNA / chemistry*
  • Electron Microscope Tomography*
  • Models, Molecular
  • Nucleic Acid Conformation
  • Protein Conformation
  • Scattering, Small Angle*

Substances

  • Bacterial Outer Membrane Proteins
  • DNA