Identification of Ppar γ-modulated miRNA hubs that target the fibrotic tumor microenvironment

Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):454-463. doi: 10.1073/pnas.1909145117. Epub 2019 Dec 23.

Abstract

Liver fibrosis interferes with normal liver function and facilitates hepatocellular carcinoma (HCC) development, representing a major threat to human health. Here, we present a comprehensive perspective of microRNA (miRNA) function on targeting the fibrotic microenvironment. Starting from a murine HCC model, we identify a miRNA network composed of 8 miRNA hubs and 54 target genes. We show that let-7, miR-30, miR-29c, miR-335, and miR-338 (collectively termed antifibrotic microRNAs [AF-miRNAs]) down-regulate key structural, signaling, and remodeling components of the extracellular matrix. During fibrogenic transition, these miRNAs are transcriptionally regulated by the transcription factor Pparγ and thus we identify a role of Pparγ as regulator of a functionally related class of AF-miRNAs. The miRNA network is active in human HCC, breast, and lung carcinomas, as well as in 2 independent mouse liver fibrosis models. Therefore, we identify a miRNA:mRNA network that contributes to formation of fibrosis in tumorous and nontumorous organs of mice and humans.

Keywords: PPARγ; fibrosis; hepatocellular carcinoma; microRNAs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Breast Neoplasms / genetics
  • Breast Neoplasms / pathology
  • Carcinoma, Hepatocellular / genetics*
  • Carcinoma, Hepatocellular / pathology
  • CpG Islands / genetics
  • DNA Methylation
  • Datasets as Topic
  • Disease Models, Animal
  • Epigenesis, Genetic
  • Extracellular Matrix / pathology
  • Female
  • Gene Expression Regulation, Neoplastic*
  • Hepatic Stellate Cells / pathology
  • Humans
  • Liver / cytology
  • Liver / pathology
  • Liver Cirrhosis / pathology*
  • Liver Neoplasms / genetics*
  • Liver Neoplasms / pathology
  • Lung Neoplasms / genetics
  • Lung Neoplasms / pathology
  • Mice
  • MicroRNAs / genetics*
  • PPAR gamma / metabolism*
  • Primary Cell Culture
  • Promoter Regions, Genetic / genetics
  • RNA-Seq
  • Tumor Microenvironment / genetics

Substances

  • MicroRNAs
  • PPAR gamma
  • Pparg protein, mouse