Identification of a truncated β1-chimaerin variant that inactivates nuclear Rac1

J Biol Chem. 2020 Jan 31;295(5):1300-1314. doi: 10.1074/jbc.RA119.008688. Epub 2019 Dec 22.

Abstract

β1-chimaerin belongs to the chimaerin family of GTPase-activating proteins (GAPs) and is encoded by the CHN2 gene, which also encodes the β2- and β3-chimaerin isoforms. All chimaerin isoforms have a C1 domain that binds diacylglycerol as well as tumor-promoting phorbol esters and a catalytic GAP domain that inactivates the small GTPase Rac. Nuclear Rac has emerged as a key regulator of various cell functions, including cell division, and has a pathological role by promoting tumorigenesis and metastasis. However, how nuclear Rac is regulated has not been fully addressed. Here, using several approaches, including siRNA-mediated gene silencing, confocal microscopy, and subcellular fractionation, we identified a nuclear variant of β1-chimaerin, β1-Δ7p-chimaerin, that participates in the regulation of nuclear Rac1. We show that β1-Δ7p-chimaerin is a truncated variant generated by alternative splicing at a cryptic splice site in exon 7. We found that, unlike other chimaerin isoforms, β1-Δ7p-chimaerin lacks a functional C1 domain and is not regulated by diacylglycerol. We found that β1-Δ7p-chimaerin localizes to the nucleus via a nuclear localization signal in its N terminus. We also identified a key nuclear export signal in β1-chimaerin that is absent in β1-Δ7p-chimaerin, causing nuclear retention of this truncated variant. Functionally analyses revealed that β1-Δ7p-chimaerin inactivates nuclear Rac and negatively regulates the cell cycle. Our results provide important insights into the diversity of chimaerin Rac-GAP regulation and function and highlight a potential mechanism of nuclear Rac inactivation that may play significant roles in pathologies such as cancer.

Keywords: GTPase-activating protein (GAP); Rac (Rac GTPase); cell cycle; cell signaling; nuclear export signal (NES); nuclear localization; nuclear localization signal (NLS); nucleus; splicing; β1-chimaerin.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Amino Acid Motifs / genetics
  • Animals
  • COS Cells
  • Cell Cycle / genetics
  • Cell Line, Tumor
  • Cell Nucleus / metabolism*
  • Chimerin Proteins / genetics*
  • Chimerin Proteins / metabolism*
  • Chlorocebus aethiops
  • Diglycerides / metabolism
  • Exons / genetics
  • Gene Silencing
  • Humans
  • Protein Domains / genetics
  • Protein Isoforms / metabolism
  • RNA, Small Interfering
  • Sequence Deletion
  • rac1 GTP-Binding Protein / genetics
  • rac1 GTP-Binding Protein / metabolism*

Substances

  • Chimerin Proteins
  • Diglycerides
  • Protein Isoforms
  • RAC1 protein, human
  • RNA, Small Interfering
  • chimaerin-beta3 protein, human
  • rac1 GTP-Binding Protein