The role of rhizodeposits in shaping rhizomicrobiome

Environ Microbiol Rep. 2020 Apr;12(2):160-172. doi: 10.1111/1758-2229.12816. Epub 2019 Dec 27.

Abstract

Rhizomicrobiome, the communities of microorganisms surrounding the root of the plant, plays a vital role in promoting plant growth and health. The composition of rhizomicrobiome is dynamic both temporally and spatially, and is influenced greatly by the plant host and environmental factors. One of the key influencing factors is rhizodeposits, composed of root-released tissue cells, exudates, lysates, volatile compounds, etc. Rhizodeposits are rich in carbon and nitrogen elements, and able to select and fuel the growth of rhizomicrobiome. In this minireview, we overview the generation, composition and dynamics of rhizodeposits, and discuss recent work describing the general and specific impacts of rhizodeposits on rhizomicrobiome. We focus further on root exudates, the most dynamic component of rhizodeposits, and review recent progresses about the influence of specific root exudates in promoting bacterial root colonization, inducing biofilm development, acting as plant defence and shaping the rhizomicrobiome.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Bacillus subtilis / genetics
  • Bacillus subtilis / growth & development
  • Bacteria / growth & development
  • Biofilms / growth & development
  • Carbon / metabolism
  • Chemotaxis
  • Disease Resistance / genetics
  • Gene Expression Regulation, Bacterial
  • Genes, Bacterial
  • Malates / metabolism
  • Nitrogen / metabolism
  • Plant Development
  • Plant Roots / chemistry
  • Plant Roots / metabolism
  • Plant Roots / microbiology*
  • Polysaccharides / metabolism
  • Pseudomonas / genetics
  • Pseudomonas / growth & development
  • Rhizobiaceae / genetics
  • Rhizobium / genetics
  • Rhizobium / growth & development
  • Root Nodules, Plant / genetics
  • Root Nodules, Plant / microbiology
  • Soil Microbiology
  • Symbiosis

Substances

  • Malates
  • Polysaccharides
  • Carbon
  • malic acid
  • Nitrogen