Genetic Factors Associated with Enhanced blaKPC Expression in Tn 3/Tn 4401 Chimeras

Antimicrob Agents Chemother. 2020 Feb 21;64(3):e01836-19. doi: 10.1128/AAC.01836-19. Print 2020 Feb 21.

Abstract

The expression of the blaKPC gene plays a key role in carbapenem resistance in Enterobacteriaceae However, the genetic regulators of the blaKPC gene have not been completely elucidated, especially the genes in Tn3-Tn4401 chimeras. Two novel Tn3-Tn4401 chimera isoforms were characterized in our hospital, isoform A (CTA), which harbors a 121-bp deletion containing the PX promoter and was present in 22.6% (54/239) of isolates, and isoform C (CTC), which harbors a 624-bp insertion and a P1 promoter deletion and was present in only 1 isolate. The carbapenem MICs of both isoforms were 2-fold or more higher than those of the wild type (Tn3-Tn4401 chimera, CTB), and blaKPC was most highly expressed in CTA. Bioinformatics and 5' rapid amplification of cDNA ends (5' RACE) experiments indicated a novel strong putative promoter, PY, at the 3' end of the ISKpn8 gene. PY mutation nearly abrogated blaKPC expression (P < 0.01) and restored carbapenem susceptibility in all 3 isoforms. Although the mutation of PX or P1 halved blaKPC expression in CTB (P < 0.05), PX deletion caused a 68% increase in blaKPC expression (P = 0.037) in CTA. The level of blaKPC mRNA in CTC was 8-fold higher than that in InCTC, which harbors P1 (P = 0.011). These results suggest that PY is a core promoter of the blaKPC gene in the chimeras and that the deletion of the PX and P1 promoters enhanced gene expression in CTA and CTC, respectively.

Keywords: Tn3-Tn4401 chimera; blaKPC; enhanced expression; genetic factors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / pharmacology*
  • Base Sequence
  • Carbapenems / pharmacology*
  • Chimerism
  • DNA Transposable Elements*
  • Escherichia coli / drug effects
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression Regulation, Bacterial*
  • Isoenzymes / genetics
  • Isoenzymes / metabolism
  • Klebsiella oxytoca / drug effects
  • Klebsiella oxytoca / genetics
  • Klebsiella oxytoca / metabolism
  • Klebsiella pneumoniae / drug effects
  • Klebsiella pneumoniae / genetics
  • Klebsiella pneumoniae / metabolism
  • Microbial Sensitivity Tests
  • Plasmids / chemistry*
  • Promoter Regions, Genetic
  • Sequence Alignment
  • Sequence Homology, Nucleic Acid
  • beta-Lactamases / genetics*
  • beta-Lactamases / metabolism

Substances

  • Anti-Bacterial Agents
  • Carbapenems
  • DNA Transposable Elements
  • Isoenzymes
  • beta-Lactamases
  • beta-lactamase KPC-2, Klebsiella pneumoniae