Involvement of condensin in cellular senescence through gene regulation and compartmental reorganization

Nat Commun. 2019 Dec 12;10(1):5688. doi: 10.1038/s41467-019-13604-5.

Abstract

Senescence is induced by various stimuli such as oncogene expression and telomere shortening, referred to as oncogene-induced senescence (OIS) and replicative senescence (RS), respectively, and accompanied by global transcriptional alterations and 3D genome reorganization. Here, we demonstrate that the human condensin II complex participates in senescence via gene regulation and reorganization of euchromatic A and heterochromatic B compartments. Both OIS and RS are accompanied by A-to-B and B-to-A compartmental transitions, the latter of which occur more frequently and are undergone by 14% (430 Mb) of the human genome. Mechanistically, condensin is enriched in A compartments and implicated in B-to-A transitions. The full activation of senescence genes (SASP genes and p53 targets) requires condensin; its depletion impairs senescence markers. This study describes that condensin reinforces euchromatic A compartments and promotes B-to-A transitions, both of which are coupled to optimal expression of senescence genes, thereby allowing condensin to contribute to senescent processes.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenosine Triphosphatases / metabolism*
  • Adenosine Triphosphatases / pharmacology*
  • Cell Cycle Proteins / genetics
  • Cell Line
  • Cellular Senescence / genetics*
  • Cellular Senescence / physiology*
  • Chromatin
  • DNA-Binding Proteins / metabolism*
  • DNA-Binding Proteins / pharmacology*
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic / drug effects*
  • Gene Knockdown Techniques
  • Genomics
  • Humans
  • Multiprotein Complexes / metabolism*
  • Multiprotein Complexes / pharmacology*
  • Nuclear Proteins / genetics
  • Oncogenes
  • Promoter Regions, Genetic
  • Telomere Shortening
  • Tumor Suppressor Protein p53 / genetics

Substances

  • Cell Cycle Proteins
  • Chromatin
  • DNA-Binding Proteins
  • Multiprotein Complexes
  • NCAPH2 protein, human
  • Nuclear Proteins
  • Tumor Suppressor Protein p53
  • condensin complexes
  • Adenosine Triphosphatases