Engineering Chirally Blind Protein Pseudocapsids into Antibacterial Persisters

ACS Nano. 2020 Feb 25;14(2):1609-1622. doi: 10.1021/acsnano.9b06814. Epub 2019 Dec 5.

Abstract

Antimicrobial resistance stimulates the search for antimicrobial forms that may be less subject to acquired resistance. Here we report a conceptual design of protein pseudocapsids exhibiting a broad spectrum of antimicrobial activities. Unlike conventional antibiotics, these agents are effective against phenotypic bacterial variants, while clearing "superbugs" in vivo without toxicity. The design adopts an icosahedral architecture that is polymorphic in size, but not in shape, and that is available in both l and d epimeric forms. Using a combination of nanoscale and single-cell imaging we demonstrate that such pseudocapsids inflict rapid and irreparable damage to bacterial cells. In phospholipid membranes they rapidly convert into nanopores, which remain confined to the binding positions of individual pseudocapsids. This mechanism ensures precisely delivered influxes of high antimicrobial doses, rendering the design a versatile platform for engineering structurally diverse and functionally persistent antimicrobial agents.

Keywords: antimicrobial resistance; artificial pseudocapsids; nanopores; persister cells; protein design; superbugs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology*
  • Antimicrobial Cationic Peptides / chemistry
  • Antimicrobial Cationic Peptides / pharmacology
  • Cell Survival / drug effects
  • Escherichia coli / drug effects*
  • Microbial Sensitivity Tests
  • Models, Molecular
  • Particle Size
  • Protein Engineering*
  • Protein Folding
  • Surface Properties

Substances

  • Anti-Bacterial Agents
  • Antimicrobial Cationic Peptides