PERK-mediated induction of microRNA-483 disrupts cellular ATP homeostasis during the unfolded protein response

J Biol Chem. 2020 Jan 3;295(1):237-249. doi: 10.1074/jbc.RA119.008336. Epub 2019 Dec 2.

Abstract

Endoplasmic reticulum (ER) stress activates the unfolded protein response (UPR), which reduces levels of misfolded proteins. However, if ER homeostasis is not restored and the UPR remains chronically activated, cells undergo apoptosis. The UPR regulator, PKR-like endoplasmic reticulum kinase (PERK), plays an important role in promoting cell death when persistently activated; however, the underlying mechanisms are poorly understood. Here, we profiled the microRNA (miRNA) transcriptome in human cells exposed to ER stress and identified miRNAs that are selectively induced by PERK signaling. We found that expression of a PERK-induced miRNA, miR-483, promotes apoptosis in human cells. miR-483 induction was mediated by a transcription factor downstream of PERK, activating transcription factor 4 (ATF4), but not by the CHOP transcription factor. We identified the creatine kinase brain-type (CKB) gene, encoding an enzyme that maintains cellular ATP reserves through phosphocreatine production, as being repressed during the UPR and targeted by miR-483. We found that ER stress, selective PERK activation, and CKB knockdown all decrease cellular ATP levels, leading to increased vulnerability to ER stress-induced cell death. Our findings identify miR-483 as a downstream target of the PERK branch of the UPR. We propose that disruption of cellular ATP homeostasis through miR-483-mediated CKB silencing promotes ER stress-induced apoptosis.

Keywords: ATP; F1F0-ATPase; PKR-like endoplasmic reticulum kinase (PERK); activating transcription factor-4 (ATF-4); creatine kinase B (CKB); endoplasmic reticulum (ER); endoplasmic reticulum stress (ER stress); fluorescence resonance energy transfer (FRET); microRNA (miRNA); stress response; translation; translation control; unfolded protein response (UPR).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Activating Transcription Factor 4 / genetics
  • Activating Transcription Factor 4 / metabolism
  • Adenosine Triphosphate / metabolism*
  • Apoptosis
  • Creatine Kinase, BB Form / genetics
  • Creatine Kinase, BB Form / metabolism
  • HEK293 Cells
  • HeLa Cells
  • Homeostasis
  • Humans
  • MicroRNAs / genetics
  • MicroRNAs / metabolism*
  • Unfolded Protein Response*
  • eIF-2 Kinase / genetics
  • eIF-2 Kinase / metabolism*

Substances

  • ATF4 protein, human
  • MIRN483 microRNA, human
  • MicroRNAs
  • Activating Transcription Factor 4
  • Adenosine Triphosphate
  • EIF2AK3 protein, human
  • eIF-2 Kinase
  • Creatine Kinase, BB Form