Analysis of Flagellin-Specific Adaptive Immunity Reveals Links to Dysbiosis in Patients With Inflammatory Bowel Disease

Cell Mol Gastroenterol Hepatol. 2020;9(3):485-506. doi: 10.1016/j.jcmgh.2019.11.012. Epub 2019 Nov 30.

Abstract

Background & aims: Bacterial flagellin is an important antigen in inflammatory bowel disease, but the role of flagellin-specific CD4+ T cells in disease pathogenesis remains unclear. Also unknown is how changes in intestinal microbiome intersect with those in microbiota-specific CD4+ T cells. We aimed to quantify and characterize flagellin-specific CD4+ T cells in Crohn's disease (CD) and ulcerative colitis (UC) patients and study their relationship with intestinal microbiome diversity.

Methods: Blood was collected from 3 cohorts that included CD patients, UC patients, and healthy controls. Flow cytometry analyzed CD4+ T cells specific for Lachnospiraceae-derived A4-Fla2 and Escherichia coli H18 FliC flagellins, or control vaccine antigens. Serum antiflagellin IgG and IgA antibodies were detected by enzyme-linked immunosorbent assay and stool samples were collected and subjected to 16S ribosomal DNA sequencing.

Results: Compared with healthy controls, CD and UC patients had lower frequencies of vaccine-antigen-specific CD4+ T cells and, as a proportion of vaccine-specific cells, higher frequencies of flagellin-specific CD4+ T cells. The proportion of flagellin-specific CD4+ T cells that were CXCR3negCCR4+CCR6+ Th17 cells was reduced in CD and UC patients, with increased proportions of CD39+, PD-1+, and integrin β7+ cells. Microbiome analysis showed differentially abundant bacterial species in patient groups that correlated with immune responses to flagellin.

Conclusions: Both CD and UC patients have relative increases in the proportion of circulating Fla2-specific CD4+ T cells, which may be associated with changes in the intestinal microbiome. Evidence that the phenotype of these cells strongly correlate with disease severity provides insight into the potential roles of flagellin-specific CD4+ T cells in inflammatory bowel disease.

Keywords: CD4(+) T Cells; Crohn’s Disease; Microbiome; Ulcerative Colitis.

Publication types

  • Observational Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptive Immunity
  • Adolescent
  • Adult
  • Aged
  • Antibodies, Bacterial / blood*
  • Antibodies, Bacterial / immunology
  • Antigens, Bacterial / immunology
  • CD4-Positive T-Lymphocytes / immunology
  • Clostridiales / genetics
  • Clostridiales / immunology
  • Colitis, Ulcerative / blood
  • Colitis, Ulcerative / immunology*
  • Colitis, Ulcerative / microbiology
  • Crohn Disease / blood
  • Crohn Disease / immunology*
  • Crohn Disease / microbiology
  • Cross-Sectional Studies
  • DNA, Bacterial / isolation & purification
  • Dysbiosis / complications*
  • Dysbiosis / diagnosis
  • Dysbiosis / immunology
  • Dysbiosis / microbiology
  • Enzyme-Linked Immunosorbent Assay
  • Escherichia coli Proteins / immunology*
  • Feces / microbiology
  • Female
  • Flagellin / immunology*
  • Gastrointestinal Microbiome / immunology
  • Healthy Volunteers
  • Humans
  • Male
  • Middle Aged
  • RNA, Ribosomal, 16S / genetics
  • T-Lymphocyte Subsets / immunology
  • Young Adult

Substances

  • Antibodies, Bacterial
  • Antigens, Bacterial
  • DNA, Bacterial
  • Escherichia coli Proteins
  • FliC protein, E coli
  • RNA, Ribosomal, 16S
  • Flagellin

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