Modulating FOXO3 transcriptional activity by small, DBD-binding molecules

Elife. 2019 Dec 4:8:e48876. doi: 10.7554/eLife.48876.

Abstract

FOXO transcription factors are critical regulators of cell homeostasis and steer cell death, differentiation and longevity in mammalian cells. By combined pharmacophore-modeling-based in silico and fluorescence polarization-based screening we identified small molecules that physically interact with the DNA-binding domain (DBD) of FOXO3 and modulate the FOXO3 transcriptional program in human cells. The mode of interaction between compounds and the FOXO3-DBD was assessed via NMR spectroscopy and docking studies. We demonstrate that compounds S9 and its oxalate salt S9OX interfere with FOXO3 target promoter binding, gene transcription and modulate the physiologic program activated by FOXO3 in cancer cells. These small molecules prove the druggability of the FOXO-DBD and provide a structural basis for modulating these important homeostasis regulators in normal and malignant cells.

Keywords: FOXO transcription factors; biochemistry; cancer biology; chemical biology; docking; drug targeting; human; molecular biophysics; pharmacophore modelling; small compounds; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites / genetics
  • Cell Line, Tumor
  • DNA / chemistry
  • DNA / genetics*
  • DNA / metabolism
  • Forkhead Box Protein O3 / chemistry
  • Forkhead Box Protein O3 / genetics*
  • Forkhead Box Protein O3 / metabolism
  • Gene Expression Profiling / methods
  • Gene Knockdown Techniques
  • HEK293 Cells
  • Humans
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Docking Simulation
  • Nucleic Acid Conformation
  • Promoter Regions, Genetic / genetics*
  • Protein Binding
  • Protein Domains
  • Small Molecule Libraries / chemistry
  • Small Molecule Libraries / metabolism
  • Small Molecule Libraries / pharmacology*
  • Transcription, Genetic / drug effects*

Substances

  • FOXO3 protein, human
  • Forkhead Box Protein O3
  • Small Molecule Libraries
  • DNA