Enzyme-mimetic self-catalyzed polymerization of polypeptide helices

Nat Commun. 2019 Nov 29;10(1):5470. doi: 10.1038/s41467-019-13502-w.

Abstract

Enzymes provide optimal three-dimensional structures for substrate binding and the subsequent accelerated reaction. Such folding-dependent catalytic behaviors, however, are seldom mechanistically explored with reduced structural complexity. Here, we demonstrate that the α-helix, a much simpler structural motif of enzyme, can facilitate its own growth through the self-catalyzed polymerization of N-carboxyanhydride (NCA) in dichloromethane. The reversible binding between the N terminus of α-helical polypeptides and NCAs promotes rate acceleration of the subsequent ring-opening reaction. A two-stage, Michaelis-Menten-type kinetic model is proposed by considering the binding and reaction between the propagating helical chains and the monomers, and is successfully utilized to predict the molecular weights and molecular-weight distributions of the resulting polymers. This work elucidates the mechanism of helix-induced, enzyme-mimetic catalysis, emphasizes the importance of solvent choice in the discovery of new reaction type, and provides a route for rapid production of well-defined synthetic polypeptides by taking advantage of self-accelerated ring-opening polymerizations.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amines / chemistry
  • Amines / metabolism
  • Anhydrides / chemistry
  • Anhydrides / metabolism*
  • Catalysis
  • Enzymes / chemistry
  • Enzymes / metabolism
  • Glutamates / chemistry
  • Glutamates / metabolism*
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Methylene Chloride
  • Models, Molecular
  • Polymerization
  • Polymers / chemistry
  • Polymers / metabolism*
  • Protein Conformation, alpha-Helical*

Substances

  • Amines
  • Anhydrides
  • Enzymes
  • Glutamates
  • Polymers
  • gamma-benzylglutamyl-N-carboxy anhydride
  • Methylene Chloride
  • hexylamine