Mode and tempo of human hepatitis virus evolution

Comput Struct Biotechnol J. 2019 Oct 25:17:1384-1395. doi: 10.1016/j.csbj.2019.09.007. eCollection 2019.

Abstract

Human viral hepatitis, a major cause of morbidity and mortality worldwide, is caused by highly diverse viruses with different genetic, ecological, and pathogenetic features. Technological advances that allow throughput sequencing of viral genomes, as well as the development of computational tools to analyze such genome data, have largely expanded our knowledge on the host range and evolutionary history of human hepatitis viruses. Thus, with the exclusion of hepatitis D virus, close or distant relatives of these human pathogens were identified in a number of domestic and wild mammals. Also, sequences of human viral strains isolated from different geographic locations and over different time-spans have allowed the application of phylogeographic and molecular dating approaches to large viral phylogenies. In this review, we summarize the most recent insights into our understanding of the evolutionary events and ecological contexts that determined the origin and spread of human hepatitis viruses.

Keywords: Host switch; Human hepatitis virus; Molecular dating; NHP, non-human primates; ORF, open reading frame; RdRp, RNA-dependent RNA polymerase; STI, sexually transmitted infection; TDRP, time-dependent rate phenomenon; TMRCA, time to the most recent common ancestor; Zoonosis.

Publication types

  • Review