TiO2 Nanoparticle-Enhanced Linker Recombinant Strand Displacement Amplification (LRSDA) for Universal Label-Free Visual Bioassays

ACS Appl Mater Interfaces. 2019 Dec 18;11(50):46504-46514. doi: 10.1021/acsami.9b16314. Epub 2019 Dec 6.

Abstract

The influence of nanomaterials on dynamic isothermal amplification and their morphology regulated by bionic biological reactions in vitro remain unknown. From a theoretical perspective, TiO2 nanoparticles enhance the amplification efficiency and reaction specificity of recombinase polymerase amplification (RPA). These nanoparticles aggregated into larger nanoclusters by adsorbing RPA components, termed nanoscale RPA factories, which increased their local concentrations to enhance RPA. Following the nick/extension cycles mediated by a bifunctional linker located at the 5' end of the forward primers, the TiO2 nanoparticle-enhanced LRSDA process produces single-stranded products, constituting the G-quadruplex DNAzymes and catalyzing the chromogenic substrate to facilitate colorimetric analysis for on-site bioassays. Salmonella spp. and genetically modified maize MON810 could be detected with a detection limit of 4 cfu/mL and 0.1% transgenic components, respectively. Briefly, TiO2-assisted isothermal molecular amplification addressed the demands of practical on-site applications.

Keywords: TiO2 nanoparticle enhancement; adsorption; label-free; linker RPA; versatile bioassays.

MeSH terms

  • Biological Assay / methods
  • Biosensing Techniques*
  • Colorimetry / methods
  • DNA, Catalytic / chemistry
  • DNA, Catalytic / genetics
  • DNA-Directed DNA Polymerase / chemistry
  • G-Quadruplexes
  • Humans
  • Nanoparticles / chemistry*
  • Nucleic Acid Amplification Techniques / methods*
  • Plants, Genetically Modified / genetics
  • Recombinases / chemistry
  • Salmonella / genetics
  • Salmonella / isolation & purification*
  • Zea mays / genetics

Substances

  • DNA, Catalytic
  • Recombinases
  • DNA-Directed DNA Polymerase