Genetic Strategies to Understand Human Diabetic Nephropathy: Wet-Lab Approaches

Methods Mol Biol. 2020:2067:205-240. doi: 10.1007/978-1-4939-9841-8_15.

Abstract

Multiple genetic strategies are available to help improve understanding of diabetic nephropathy. This methods chapter provides an overview of phenotype considerations specific to diabetic nephropathy and biobank essentials, and provides detailed methodology for a common benchtop wet-lab approach (Ion Torrent semiconductor sequencing) including in silico genetic variant identification from next-generation sequencing data to identify genetic risk factors for diabetic nephropathy.

Keywords: Association; Diabetic nephropathy; Genome-wide; Illumina; Kidney; Next-generation sequencing; S5XL; SNP; Torrent; Trend; Variant.

Publication types

  • Review

MeSH terms

  • Case-Control Studies
  • Computational Biology
  • Cross-Sectional Studies
  • Diabetes Mellitus, Type 1 / complications
  • Diabetes Mellitus, Type 1 / pathology
  • Diabetes Mellitus, Type 1 / urine
  • Diabetes Mellitus, Type 2 / complications
  • Diabetes Mellitus, Type 2 / pathology
  • Diabetes Mellitus, Type 2 / urine
  • Diabetic Nephropathies / diagnosis
  • Diabetic Nephropathies / genetics*
  • Diabetic Nephropathies / urine
  • Follow-Up Studies
  • Genetic Association Studies / methods*
  • Genetic Predisposition to Disease
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Polymorphism, Single Nucleotide
  • Research Design*
  • Risk Factors