Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild

Duarte Gouveia; Yannick Cogne; Jean-Charles Gaillard; Christine Almunia; Olivier Pible; Adeline François; Davide Degli-Esposti; Olivier Geffard; Arnaud Chaumot; Jean Armengaud

doi:10.1016/j.dib.2019.104650

Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild

Data Brief. 2019 Oct 12:27:104650. doi: 10.1016/j.dib.2019.104650. eCollection 2019 Dec.

Affiliations

¹ Laboratoire Innovations technologiques pour la Détection et le Diagnostic (Li2D), Service de Pharmacologie et Immunoanalyse (SPI), CEA, INRA, F-30207 Bagnols-sur-Cèze, France.
² Irstea, UR RiverLy, Laboratoire d'écotoxicologie, centre de Lyon-Villeurbanne, F-69625 Villeurbanne, France.

Abstract

This data article associated with the manuscript "Comparative proteomics in the wild: accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium" refers to the shotgun proteomics analysis performed on 40 Gammarus pulex animals sampled from the wild. Proteins were extracted, digested with trypsin, and the resulting peptides were identified by tandem mass spectrometry. Here, we present the list of proteins from males and the list of proteins from females that are differentially detected between the Brameloup and the Pollon populations. Data are available via ProteomeXchange with identifiers PXD013656 and PXD013712, respectively.

Keywords: Amphipods; Cadmium contamination; Ecotoxicology; Intrapopulation variability; Proteomics; Sentinel animal.