BRADSHAW: a system for automated molecular design

J Comput Aided Mol Des. 2020 Jul;34(7):747-765. doi: 10.1007/s10822-019-00234-8. Epub 2019 Oct 21.

Abstract

This paper introduces BRADSHAW (Biological Response Analysis and Design System using an Heterogenous, Automated Workflow), a system for automated molecular design which integrates methods for chemical structure generation, experimental design, active learning and cheminformatics tools. The simple user interface is designed to facilitate access to large scale automated design whilst minimising software development required to introduce new algorithms, a critical requirement in what is a very fast moving field. The system embodies a philosophy of automation, best practice, experimental design and the use of both traditional cheminformatics and modern machine learning algorithms.

Keywords: Active learning; Automated design; Cheminformatics; Experimental design.

MeSH terms

  • Adenosine A2 Receptor Antagonists / chemistry
  • Algorithms
  • Cheminformatics / methods
  • Cheminformatics / statistics & numerical data
  • Cheminformatics / trends
  • Computer-Aided Design* / statistics & numerical data
  • Computer-Aided Design* / trends
  • Deep Learning
  • Drug Design*
  • Drug Discovery / methods
  • Drug Discovery / statistics & numerical data
  • Drug Discovery / trends
  • Humans
  • Machine Learning
  • Matrix Metalloproteinase Inhibitors / chemistry
  • Quantitative Structure-Activity Relationship
  • Small Molecule Libraries
  • Software
  • User-Computer Interface
  • Workflow

Substances

  • Adenosine A2 Receptor Antagonists
  • Matrix Metalloproteinase Inhibitors
  • Small Molecule Libraries