Bioactive Diketopiperazines and Nucleoside Derivatives from a Sponge-Derived Streptomyces Species

Mar Drugs. 2019 Oct 16;17(10):584. doi: 10.3390/md17100584.

Abstract

Fractionation and purification of the ethyl acetate extract of the culture of a sponge-derived actinomycete, Streptomyces species Call-36, resulted in the isolation and identification of a new diketopiperazine, actinozine A (1), cyclo(2-OH-d-Pro-l-Leu) (2), two new nucleosides, thymidine-3-mercaptocarbamic acid (3) and thymidine-3-thioamine (4), together with cyclo(d-Pro-l-Phe) (5) and cyclo(l-Pro-l-Phe) (6). The structure assignments of the compounds were carried out by interpretation of 1D and 2D NMR data and mass spectral determinations. The absolute configurations of 1 and 2 were determined by Marfey's method and by comparison of the experimental and TDDFT-calculated ECD spectra. Actinozine A possesses an unprecedented hydroperoxy moiety at C-2 of the proline moiety, while 3 and 4 possess unusual mercaptocarbamic acid and thiohydroxylamine functionalities at N-3 of the thymine moiety. The isolated compounds displayed variable cytotoxic and antimicrobial activities.

Keywords: NMR and ECD calculations; cytotoxic and antimicrobial activities; diketopiperazine alkaloids; nucleoside derivatives; sponge-derived Streptomyces sp. Call-36.

MeSH terms

  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Antifungal Agents / pharmacology
  • Antineoplastic Agents / pharmacology
  • Cell Line, Tumor
  • Diketopiperazines / chemistry*
  • Diketopiperazines / pharmacology*
  • HCT116 Cells
  • Humans
  • MCF-7 Cells
  • Microbial Sensitivity Tests / methods
  • Molecular Structure
  • Nucleosides / chemistry*
  • Nucleosides / pharmacology*
  • Peptides, Cyclic / pharmacology
  • Porifera / microbiology*
  • Streptomyces / metabolism*

Substances

  • Anti-Bacterial Agents
  • Antifungal Agents
  • Antineoplastic Agents
  • Diketopiperazines
  • Nucleosides
  • Peptides, Cyclic