A DNA electrochemical biosensor based on triplex DNA-templated Ag/Pt nanoclusters for the detection of single-nucleotide variant

Talanta. 2020 Jan 15:207:120257. doi: 10.1016/j.talanta.2019.120257. Epub 2019 Aug 14.

Abstract

A label-free electrochemical biosensor based on the triplex DNA-templated Ag/Pt bimetallic nanoclusters (triplex-Ag/PtNCs) and locked nucleic acid (LNA) modified X-shaped DNA probe was developed for the detection of single-nucleotide variant (SNV) related to β-thalassemia. Firstly, using triplex DNA as template, a site-specific and homogeneous Ag/PtNCs was prepared, which can effectively catalyze the 3,3,5,5-tetramethylbenzidine-H2O2 system and thus be employed as a signal reporter in the field of electrochemical biosensor. Secondly, the LNA modified X-shaped probes were assembled on gold electrode surface, which can only be dissociated in the presence of target, leading to the hybridization with triplex-Ag/PtNCs and significant increase of current signal. In this way, the detection limit for SNV of β-thalassemia was 0.8 fM with variant allele frequency (VAF) as low as 0.0001%.

Keywords: DNA electrochemical biosensor; Peroxidase-mimic; Single-nucleotide variant; Triplex DNA-Templated Ag/Pt nanoclusters.

MeSH terms

  • Biosensing Techniques / methods*
  • Catalysis
  • DNA / chemistry*
  • DNA Probes / chemistry
  • DNA Probes / metabolism
  • Electrochemistry
  • Limit of Detection
  • Metal Nanoparticles
  • Models, Molecular
  • Nucleic Acid Conformation
  • Oligonucleotides / chemistry
  • Oligonucleotides / metabolism
  • Platinum / chemistry*
  • Polymorphism, Single Nucleotide*
  • Silver / chemistry*

Substances

  • DNA Probes
  • Oligonucleotides
  • locked nucleic acid
  • triplex DNA
  • Silver
  • Platinum
  • DNA