Functional Genomics of the Retina to Elucidate its Construction and Deconstruction

Int J Mol Sci. 2019 Oct 4;20(19):4922. doi: 10.3390/ijms20194922.

Abstract

The retina is the light sensitive part of the eye and nervous tissue that have been used extensively to characterize the function of the central nervous system. The retina has a central position both in fundamental biology and in the physiopathology of neurodegenerative diseases. We address the contribution of functional genomics to the understanding of retinal biology by reviewing key events in their historical perspective as an introduction to major findings that were obtained through the study of the retina using genomics, transcriptomics and proteomics. We illustrate our purpose by showing that most of the genes of interest for retinal development and those involved in inherited retinal degenerations have a restricted expression to the retina and most particularly to photoreceptors cells. We show that the exponential growth of data generated by functional genomics is a future challenge not only in terms of storage but also in terms of accessibility to the scientific community of retinal biologists in the future. Finally, we emphasize on novel perspectives that emerge from the development of redox-proteomics, the new frontier in retinal biology.

Keywords: age-related macular degeneration; comparative genomics; inherited retinal degenerations; photoreceptors; proteomics; redox-biology; retinal development; retinitis pigmentosa; transcriptomics.

Publication types

  • Review

MeSH terms

  • Animals
  • Genomics / methods
  • Humans
  • Photoreceptor Cells / metabolism*
  • Photoreceptor Cells / pathology
  • Proteome*
  • Retinal Degeneration / genetics*
  • Retinal Degeneration / metabolism
  • Retinal Degeneration / pathology
  • Transcriptome*

Substances

  • Proteome