Conjugative Assembly Genome Engineering (CAGE)

Methods Mol Biol. 2020:2075:399-409. doi: 10.1007/978-1-4939-9877-7_28.

Abstract

Conjugative assembly genome engineering (CAGE) enables the transfer of large chromosomal regions from a donor to a recipient. Specific regions of the donor chromosome can be introduced in the recipient genome by the directed insertion of an origin of transfer and two selection cassettes. Multiple paired CAGE experiments can be combined to generate chimeric chromosomes from different donor strains.

Keywords: Bacterial genetic engineering; Chromosome manipulation; Synthetic biology.

MeSH terms

  • Alleles
  • Bacteria / genetics
  • Conjugation, Genetic*
  • DNA, Bacterial
  • Gene Transfer, Horizontal*
  • Genetic Engineering*
  • Genetic Markers
  • Genetic Testing
  • Genome, Bacterial*
  • Genomics / methods
  • Genotyping Techniques
  • Plasmids / genetics
  • Recombination, Genetic
  • Whole Genome Sequencing

Substances

  • DNA, Bacterial
  • Genetic Markers