RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli

J Microbiol. 2019 Oct;57(10):910-917. doi: 10.1007/s12275-019-9354-6. Epub 2019 Sep 30.

Abstract

Studies have shown that many enzymes involved in glycolysis are upregulated in Escherichia coli endoribonuclease G (rng) null mutants. However, the molecular mechanisms underlying the RNase G-associated regulation of glycolysis have not been characterized. Here, we show that RNase G cleaves the 5' untranslated region of triosephosphate isomerase A (tpiA) mRNA, leading to destabilization of the mRNA in E. coli. Nucleotide substitutions within the RNase G cleavage site in the genome resulted in altered tpiA mRNA stability, indicating that RNase G activity influences tpiA mRNA abundance. In addition, we observed that tpiA expression was enhanced, whereas that of RNase G was decreased, in E. coli cells grown anaerobically. Our findings suggest that RNase G negatively regulates tpiA mRNA abundance in response to oxygen availability in E. coli.

Keywords: RNase G; glycolysis; mRNA abundance; rng; tpiA.

MeSH terms

  • Endoribonucleases / genetics
  • Endoribonucleases / metabolism*
  • Escherichia coli / chemistry
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Gene Expression Regulation, Bacterial
  • RNA Stability
  • RNA, Bacterial / chemistry
  • RNA, Bacterial / genetics
  • RNA, Bacterial / metabolism
  • RNA, Messenger / chemistry
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • Triose-Phosphate Isomerase / genetics*
  • Triose-Phosphate Isomerase / metabolism

Substances

  • Escherichia coli Proteins
  • RNA, Bacterial
  • RNA, Messenger
  • Endoribonucleases
  • rng protein, E coli
  • Triose-Phosphate Isomerase