Current omics-based biomarkers for cholangiocarcinoma

Expert Rev Mol Diagn. 2019 Nov;19(11):997-1005. doi: 10.1080/14737159.2019.1673162. Epub 2019 Oct 1.

Abstract

Introduction: Cholangiocarcinoma (CCA) is a malignancy of the biliary tract. CCA generally has a low incidence worldwide but incidence is typically high in Southeast Asian countries, particularly in northeastern Thailand, where small liver-fluke (Opisthorchis viverrini) infection is endemic. CCA has a poor prognosis as most CCA patients present with advanced stages. Poor prognosis and worse outcomes are due to the lack of specific and early-stage CCA biomarkers. Areas covered: In this review, we discuss the use of CCA tissues, serum and bile samples as sources of diagnostic and prognostic markers by using -omics approaches, including genomics, epigenomics, transcriptomics and proteomics. The current state of the discovery of molecular candidates and their potential to be used as diagnostic and prognostic biomarkers for CCA are summarized and discussed. Expert opinion: Various potential molecules have been discovered, some of which have been verified as diagnostic biomarkers for CCA. However, most identified molecules require much further evaluation to help us find markers with high specificity, low cost and ease-of-use in routine diagnostic laboratories.

Keywords: -omics approaches; Cholangiocarcinoma; biomarkers; diagnosis; prognosis.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Biliary Tract Neoplasms / diagnosis
  • Biliary Tract Neoplasms / genetics*
  • Biliary Tract Neoplasms / metabolism
  • Biomarkers, Tumor / genetics*
  • Biomarkers, Tumor / metabolism
  • Cholangiocarcinoma / diagnosis
  • Cholangiocarcinoma / genetics*
  • Cholangiocarcinoma / metabolism
  • Epigenesis, Genetic
  • Genomics / methods*
  • Humans
  • Proteome / genetics
  • Proteome / metabolism

Substances

  • Biomarkers, Tumor
  • Proteome