RNAi-mediated depletion of the NSL complex subunits leads to abnormal chromosome segregation and defective centrosome duplication in Drosophila mitosis

PLoS Genet. 2019 Sep 17;15(9):e1008371. doi: 10.1371/journal.pgen.1008371. eCollection 2019 Sep.

Abstract

The Drosophila Nonspecific Lethal (NSL) complex is a major transcriptional regulator of housekeeping genes. It contains at least seven subunits that are conserved in the human KANSL complex: Nsl1/Wah (KANSL1), Dgt1/Nsl2 (KANSL2), Rcd1/Nsl3 (KANSL3), Rcd5 (MCRS1), MBD-R2 (PHF20), Wds (WDR5) and Mof (MOF/KAT8). Previous studies have shown that Dgt1, Rcd1 and Rcd5 are implicated in centrosome maintenance. Here, we analyzed the mitotic phenotypes caused by RNAi-mediated depletion of Rcd1, Rcd5, MBD-R2 or Wds in greater detail. Depletion of any of these proteins in Drosophila S2 cells led to defects in chromosome segregation. Consistent with these findings, Rcd1, Rcd5 and MBD-R2 RNAi cells showed reduced levels of both Cid/CENP-A and the kinetochore component Ndc80. In addition, RNAi against any of the four genes negatively affected centriole duplication. In Wds-depleted cells, the mitotic phenotypes were similar but milder than those observed in Rcd1-, Rcd5- or MBD-R2-deficient cells. RT-qPCR experiments and interrogation of published datasets revealed that transcription of many genes encoding centromere/kinetochore proteins (e.g., cid, Mis12 and Nnf1b), or involved in centriole duplication (e.g., Sas-6, Sas-4 and asl) is substantially reduced in Rcd1, Rcd5 and MBD-R2 RNAi cells, and to a lesser extent in wds RNAi cells. During mitosis, both Rcd1-GFP and Rcd5-GFP accumulate at the centrosomes and the telophase midbody, MBD-R2-GFP is enriched only at the chromosomes, while Wds-GFP accumulates at the centrosomes, the kinetochores, the midbody, and on a specific chromosome region. Collectively, our results suggest that the mitotic phenotypes caused by Rcd1, Rcd5, MBD-R2 or Wds depletion are primarily due to reduced transcription of genes involved in kinetochore assembly and centriole duplication. The differences in the subcellular localizations of the NSL components may reflect direct mitotic functions that are difficult to detect at the phenotypic level, because they are masked by the transcription-dependent deficiency of kinetochore and centriolar proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Cycle Proteins / genetics
  • Centromere / metabolism
  • Centrosome / metabolism
  • Chromosome Duplication / genetics*
  • Chromosome Segregation / genetics*
  • Drosophila Proteins / genetics
  • Drosophila Proteins / metabolism
  • Drosophila melanogaster / genetics
  • Kinetochores / metabolism
  • Microtubules / metabolism
  • Mitosis / genetics
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Protein Transport / physiology
  • RNA Interference
  • RNA-Binding Proteins / genetics
  • Regulatory Elements, Transcriptional / genetics
  • Spindle Apparatus / genetics
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism
  • Vesicular Transport Proteins / genetics

Substances

  • Cell Cycle Proteins
  • Drosophila Proteins
  • Nuclear Proteins
  • RNA-Binding Proteins
  • Rcd5 protein, Drosophila
  • Transcription Factors
  • Vesicular Transport Proteins

Grants and funding

This work was supported in part by a grant from the Ministry of Education and Science of the Russian Federation (14.Z50.31.0005 to MG) for analysis of mitotic phenotypes after RNAi treatments, by a Russian Science Foundation grant (16-14-10288 to AVP) for generation of cell lines expressing GFP-tagged proteins and ChIP data analysis, by the Fundamental Scientific Research Program of the Siberian Branch of the Russian Academy of Sciences (project 0310-2019-0005 to AVP) for RT-qPCR experiments, and by a grant from Associazione Italiana per la Ricerca sul Cancro (AIRC, IG 20528 to MG; http://www.airc.it/).The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.