19F Paramagnetic Relaxation-Based NMR for Quaternary Structural Restraints of Ion Channels

ACS Chem Biol. 2019 Oct 18;14(10):2160-2165. doi: 10.1021/acschembio.9b00692. Epub 2019 Sep 18.

Abstract

Quaternary distance restraints are essential to define the three-dimensional structures of protein assemblies. These distances often fall within a range of 10-18 Å, which challenges the high and low measurement limits of conventional nuclear magnetic resonance (NMR) and double electron-electron resonance electron spin resonance spectroscopies. Here, we report the use of 19F paramagnetic relaxation enhancement (PRE) NMR in combination with 19F/paramagnetic labeling to equivalent sites in different subunits of a protein complex in micelles to determine intersubunit distances. The feasibility of this strategy was evaluated on a pentameric ligand-gated ion channel, for which we found excellent agreement of the 19F PRE NMR results with previous structural information. The study suggests that 19F PRE NMR is a viable tool in extracting distance restraints to define quaternary structures.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Bacterial Proteins / chemistry
  • Dickeya
  • Fluorine
  • Gammaproteobacteria / chemistry
  • Ion Channels / chemistry*
  • Mice
  • Nuclear Magnetic Resonance, Biomolecular / methods
  • Protein Structure, Quaternary*
  • Protein Subunits / chemistry*

Substances

  • Bacterial Proteins
  • Ion Channels
  • Protein Subunits
  • Fluorine

Supplementary concepts

  • Dickeya dadantii