Photoinduced Electron Transfer in a Radical SAM Enzyme Generates an S-Adenosylmethionine Derived Methyl Radical

J Am Chem Soc. 2019 Oct 9;141(40):16117-16124. doi: 10.1021/jacs.9b08541. Epub 2019 Sep 26.

Abstract

Radical SAM (RS) enzymes use S-adenosyl-l-methionine (SAM) and a [4Fe-4S] cluster to initiate a broad spectrum of radical transformations throughout all kingdoms of life. We report here that low-temperature photoinduced electron transfer from the [4Fe-4S]1+ cluster to bound SAM in the active site of the hydrogenase maturase RS enzyme, HydG, results in specific homolytic cleavage of the S-CH3 bond of SAM, rather than the S-C5' bond as in the enzyme-catalyzed (thermal) HydG reaction. This result is in stark contrast to a recent report in which photoinduced ET in the RS enzyme pyruvate formate-lyase activating enzyme cleaved the S-C5' bond to generate a 5'-deoxyadenosyl radical, and provides the first direct evidence for homolytic S-CH3 bond cleavage in a RS enzyme. Photoinduced ET in HydG generates a trapped CH3 radical, as well as a small population of an organometallic species with an Fe-CH3 bond, denoted ΩM. The CH3 radical is surprisingly found to exhibit rotational diffusion in the HydG active site at temperatures as low as 40 K, and is rapidly quenched: whereas 5'-dAdo is stable indefinitely at 77 K, CH3 quenches with a half-time of ∼2 min at this temperature. The rapid quenching and rotational/translational freedom of CH3 shows that enzymes would be unable to harness this radical as a regio- and stereospecific H atom abstractor during catalysis, in contrast to the exquisite control achieved with the enzymatically generated 5'-dAdo.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Acetyltransferases / chemistry
  • Acetyltransferases / metabolism
  • Catalytic Domain
  • Electron Transport
  • Enzyme Activation
  • Hydrolases / chemistry*
  • Hydrolases / metabolism
  • Iron-Sulfur Proteins / chemistry*
  • Methane / analogs & derivatives*
  • Methane / chemistry
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Photolysis
  • S-Adenosylmethionine / chemistry*

Substances

  • Iron-Sulfur Proteins
  • methyl radical
  • S-Adenosylmethionine
  • Acetyltransferases
  • pyruvate formate-lyase activating enzyme
  • Hydrolases
  • adenosylmethionine hydrolase
  • Methane