A role for DIS3L2 over natural nonsense-mediated mRNA decay targets in human cells

Biochem Biophys Res Commun. 2019 Oct 22;518(4):664-671. doi: 10.1016/j.bbrc.2019.08.105. Epub 2019 Aug 26.

Abstract

The nonsense-mediated decay (NMD) pathway selectively degrades mRNAs carrying a premature translation-termination codon but also regulates the abundance of a large number of physiological mRNAs that encode full-length proteins. In human cells, NMD-targeted mRNAs are degraded by endonucleolytic cleavage and exonucleolytic degradation from both 5-' and 3'-ends. This is done by a process not yet completely understood that recruits decapping and 5'-to-3' exonuclease activities, as well as deadenylating and 3'-to-5' exonuclease exosome activities. In yeast, DIS3/Rrp44 protein is the catalytic subunit of the exosome, but in humans, there are three known paralogues of this enzyme: DIS3, DIS3L1, and DIS3L2. However, little is known about their role in NMD. Here, we show that some NMD-targets are DIS3L2 substrates in human cells. In addition, we observed that DIS3L2 acts over full-length transcripts, through a process that also involves UPF1. Moreover, DIS3L2-mediated decay is dependent on the activity of the terminal uridylyl transferases Zcchc6/11 (TUT7/4). Together, our findings establish a role for DIS3L2 and uridylation in NMD.

Keywords: DIS3L2; NMD; Nonsense-mediated mRNA decay; Terminal uridylyl transferases Zcchc6/11 (TUT7/4); mRNA turnover.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Exoribonucleases / genetics*
  • Exoribonucleases / metabolism
  • Exosome Multienzyme Ribonuclease Complex / genetics*
  • Exosome Multienzyme Ribonuclease Complex / metabolism
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Nonsense Mediated mRNA Decay / genetics*
  • RNA Helicases / genetics
  • RNA Helicases / metabolism
  • RNA Nucleotidyltransferases / genetics
  • RNA Nucleotidyltransferases / metabolism
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • Trans-Activators / genetics
  • Trans-Activators / metabolism
  • Uridine Monophosphate / metabolism

Substances

  • DNA-Binding Proteins
  • RNA, Messenger
  • TUT4 protein, human
  • Trans-Activators
  • Uridine Monophosphate
  • RNA Nucleotidyltransferases
  • TUT7 protein, human
  • DIS3L2 protein, human
  • Exoribonucleases
  • Exosome Multienzyme Ribonuclease Complex
  • RNA Helicases
  • UPF1 protein, human