Energetics and Vibrational Signatures of Nucleobase Argyrophilic Interactions

Suhwan Paul Lee; Sarah N Johnson; Thomas L Ellington; Nasrin Mirsaleh-Kohan; Gregory S Tschumper

doi:10.1021/acsomega.8b01895

Energetics and Vibrational Signatures of Nucleobase Argyrophilic Interactions

ACS Omega. 2018 Oct 10;3(10):12936-12943. doi: 10.1021/acsomega.8b01895. eCollection 2018 Oct 31.

Authors

Suhwan Paul Lee¹, Sarah N Johnson¹, Thomas L Ellington¹, Nasrin Mirsaleh-Kohan², Gregory S Tschumper¹

Affiliations

¹ Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States.
² Department of Chemistry and Biochemistry, Texas Woman's University, Denton, Texas 76204, United States.

Abstract

This study investigates the interactions of both purine (adenine and guanine) and pyrimidine (cytosine, thymine, and uracil) nucleobases with a pair of silver atoms (Ag₂). Full geometry optimizations were performed on several structures of each nucleobase/Ag₂ complex and the corresponding isolated monomers using the M06-2X density functional with a correlation consistent triple-ζ basis set augmented with diffuse functions on all atoms and a relativistic pseudopotential on Ag (aug-cc-pVTZ for H, C, N, and O and aug-cc-pVTZ-PP for Ag; denoted aVTZ). Harmonic vibrational frequency computations indicate that each optimized structure corresponds to a minimum on the M06-2X/aVTZ potential energy surface. Relative electronic energies for interactions between Ag₂ and each nucleobase were compared to elucidate energetic differences between isomers. Further analysis of the changes in vibrational frequencies, infrared intensities, and Raman scattering activities reveals how different Ag₂ binding sites might be differentiated spectroscopically. These results provide molecular-level insight into the interactions between nucleobases and silver, which may lead to better understanding and interpretation of surface-enhanced Raman spectroscopy experiments on nucleobases and related systems.