A genetic selection reveals functional metastable structures embedded in a toxin-encoding mRNA

Elife. 2019 Aug 14:8:e47549. doi: 10.7554/eLife.47549.

Abstract

Post-transcriptional regulation plays important roles to fine-tune gene expression in bacteria. In particular, regulation of type I toxin-antitoxin (TA) systems is achieved through sophisticated mechanisms involving toxin mRNA folding. Here, we set up a genetic approach to decipher the molecular underpinnings behind the regulation of a type I TA in Helicobacter pylori. We used the lethality induced by chromosomal inactivation of the antitoxin to select mutations that suppress toxicity. We found that single point mutations are sufficient to allow cell survival. Mutations located either in the 5' untranslated region or within the open reading frame of the toxin hamper its translation by stabilizing stem-loop structures that sequester the Shine-Dalgarno sequence. We propose that these short hairpins correspond to metastable structures that are transiently formed during transcription to avoid premature toxin expression. This work uncovers the co-transcriptional inhibition of translation as an additional layer of TA regulation in bacteria.

Keywords: Helicobacter pylori; chromosomes; gene expression; genetics; genomics; mRNA folding; toxin antitoxin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Toxins / biosynthesis
  • Bacterial Toxins / genetics*
  • Helicobacter pylori / genetics
  • Helicobacter pylori / growth & development
  • Helicobacter pylori / metabolism*
  • Microbial Viability
  • Nucleic Acid Conformation*
  • Point Mutation
  • Protein Biosynthesis
  • RNA Folding*
  • RNA, Messenger / chemistry*
  • RNA, Messenger / genetics
  • Selection, Genetic
  • Toxin-Antitoxin Systems*

Substances

  • Bacterial Toxins
  • RNA, Messenger

Associated data

  • GEO/GSE121423