DNA and RNA Stable Isotope Probing of Methylotrophic Methanogenic Archaea

Methods Mol Biol. 2019:2046:189-206. doi: 10.1007/978-1-4939-9721-3_15.

Abstract

Methylotrophic methanogenic archaea are an integral part of the carbon cycle in various anaerobic environments. Different from methylotrophic bacteria, methylotrophic methanogens assimilate both, the methyl compound and dissolved inorganic carbon. Here, we present DNA- and RNA-stable isotope probing (SIP) methods involving an effective labeling strategy using 13C-labeled dissolved inorganic carbon (DIC) as carbon source along with methanol as dissimilatory substrate.

Keywords: Dissolved inorganic carbon; Labeling strategy; Methanol; Methylotrophic methanogens; Stable isotope probing (SIP).

MeSH terms

  • Archaea / genetics*
  • Carbon / metabolism
  • Carbon Isotopes / analysis*
  • Carbon Isotopes / chemistry
  • Centrifugation, Density Gradient
  • DNA Probes
  • DNA, Archaeal / analysis
  • DNA, Archaeal / isolation & purification
  • DNA, Archaeal / metabolism*
  • Geologic Sediments / analysis
  • Geologic Sediments / chemistry
  • Geologic Sediments / microbiology
  • Isotope Labeling / methods*
  • Methane / metabolism
  • Methanol
  • Phylogeny
  • RNA Probes
  • RNA, Archaeal / analysis
  • RNA, Archaeal / isolation & purification
  • RNA, Archaeal / metabolism*
  • RNA, Ribosomal, 16S / genetics

Substances

  • Carbon Isotopes
  • DNA Probes
  • DNA, Archaeal
  • RNA Probes
  • RNA, Archaeal
  • RNA, Ribosomal, 16S
  • Carbon
  • Methane
  • Methanol