Genome sequence analysis of Vibrio parahaemolyticus lytic phage Vp_R1 with a C3 morphotype

Arch Virol. 2019 Nov;164(11):2865-2871. doi: 10.1007/s00705-019-04364-0. Epub 2019 Aug 10.

Abstract

Phage Vp_R1 belongs to the family Podoviridae and has a C3 morphotype, with an elongated head with a diameter of 190 ± 1.1 nm and an ultrashort tail with a length of 9 ± 1.2 nm. The double-stranded DNA genome is 112.1 kb long, has a mol% G + C content of 40.3, contains 129 ORFs, and encodes four tRNAs. Phylogenetic analysis suggests that phage Vp_R1 is a novel member of the genus Kuravirus.

MeSH terms

  • Amino Acid Sequence
  • Base Composition / genetics
  • DNA, Viral / genetics
  • Genome, Viral / genetics*
  • Open Reading Frames / genetics
  • Podoviridae / genetics*
  • Podoviridae / isolation & purification
  • Sequence Analysis, DNA
  • Vibrio parahaemolyticus / virology*
  • Viral Proteins / genetics

Substances

  • DNA, Viral
  • Viral Proteins