The essential elements for the noncovalent association of two DNA ends during NHEJ synapsis

Nat Commun. 2019 Aug 9;10(1):3588. doi: 10.1038/s41467-019-11507-z.

Abstract

One of the most central questions about the repair of a double-strand DNA break (DSB) concerns how the two free DNA ends are brought together - a step called synapsis. Using single-molecule FRET (smFRET), we show here that both Ku plus XRCC4:DNA ligase IV are necessary and sufficient to achieve a flexible synapsis of blunt DNA ends, whereas either alone is not. Addition of XLF causes a transition to a close synaptic state, and maximum efficiency of close synapsis is achieved within 20 min. The promotion of close synapsis by XLF indicates a role that is independent of a filament structure, with action focused at the very ends of each duplex. DNA-PKcs is not required for the formation of either the flexible or close synaptic states. This model explains in biochemical terms the evolutionarily central synaptic role of Ku, X4L4, and XLF in NHEJ for all eukaryotes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Breaks, Double-Stranded*
  • DNA End-Joining Repair*
  • DNA Ligase ATP / genetics
  • DNA Ligase ATP / metabolism
  • DNA Repair Enzymes / genetics
  • DNA Repair Enzymes / metabolism
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Fluorescence Resonance Energy Transfer
  • Ku Autoantigen / genetics
  • Ku Autoantigen / metabolism
  • Models, Genetic
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Single Molecule Imaging

Substances

  • DNA-Binding Proteins
  • LIG4 protein, human
  • NHEJ1 protein, human
  • Recombinant Proteins
  • XRCC4 protein, human
  • XRCC5 protein, human
  • Ku Autoantigen
  • DNA Repair Enzymes
  • DNA Ligase ATP