Confirmation and further delineation of the SMG9-deficiency syndrome, a rare and severe developmental disorder

Am J Med Genet A. 2019 Nov;179(11):2257-2262. doi: 10.1002/ajmg.a.61317. Epub 2019 Aug 7.

Abstract

Introduction: SMG9 deficiency is an extremely rare autosomal recessive condition originally described in three patients from two families harboring homozygous truncating SMG9 variants in a context of severe syndromic developmental disorder. To our knowledge, no additional patient has been described since this first report.

Methods: We performed exome sequencing in a patient exhibiting a syndromic developmental delay and in her unaffected parents and report the phenotypic features.

Results: Our patient presented with a syndromic association of severe global developmental delay and diverse malformations, including cleft lip and palate, facial dysmorphic features, brain abnormalities, heart defect, growth retardation, and severe infections. She carried a novel SMG9 homozygous variant NM_019108.3:c.1177C>T, p.(Gln393*), while her unaffected parents were both heterozygous.

Conclusions: We confirm that bi-allelic truncating SMG9 variants cause a severe developmental syndrome including brain and heart malformations associated with facial dysmorphic features, severe growth and developmental delay with or without ophthalmological abnormalities, severe feeding difficulties, and life-threatening infections.

Keywords: SMG9; heart and brain malformation; nonsense mediated decay.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Brain / abnormalities
  • Brain / diagnostic imaging
  • Child, Preschool
  • Consanguinity
  • Developmental Disabilities / diagnosis*
  • Developmental Disabilities / genetics*
  • Female
  • Genetic Association Studies* / methods
  • Genetic Predisposition to Disease*
  • Homozygote
  • Humans
  • Intracellular Signaling Peptides and Proteins / genetics*
  • Mutation*
  • Pedigree
  • Phenotype
  • Syndrome

Substances

  • Intracellular Signaling Peptides and Proteins
  • SMG9 protein, human