Factors Influencing the Activity of Nanozymes in the Cleavage of an RNA Model Substrate

Molecules. 2019 Aug 1;24(15):2814. doi: 10.3390/molecules24152814.

Abstract

A series of 2-nm gold nanoparticles passivated with different thiols all featuring at least one triazacyclonanone-Zn(II) complex and different flanking units (a second Zn(II) complex, a triethyleneoxymethyl derivative or a guanidinium of arginine of a peptide) were prepared and studied for their efficiency in the cleavage of the RNA-model substrate 2-hydroxypropyl-p-nitrophenyl phosphate. The source of catalysis for each of them was elucidated from the kinetic analysis (Michaelis-Menten profiles, pH dependence and kinetic isotope effect). The data indicated that two different mechanisms were operative: One involving two Zn(II) complexes and the other one involving a single Zn(II) complex and a flanking guanidinium cation. The mechanism based on a dinuclear catalytic site appeared more efficient than the one based on the cooperativity between a metal complex and a guanidinium.

Keywords: Zn(II) catalysis; gold nanoparticles; guanidinium catalysis; nanozymes; phosphate cleavage.

MeSH terms

  • Aza Compounds / chemistry*
  • Catalysis
  • Coordination Complexes / chemistry*
  • Gold / chemistry
  • Kinetics
  • Metal Nanoparticles / chemistry*
  • Models, Molecular
  • Molecular Structure
  • Piperidines / chemistry*
  • RNA / chemistry*
  • Sulfhydryl Compounds / chemistry
  • Zinc / chemistry

Substances

  • Aza Compounds
  • Coordination Complexes
  • Piperidines
  • Sulfhydryl Compounds
  • triazacyclononane
  • RNA
  • Gold
  • Zinc