Whole exome sequencing in childhood-onset lupus frequently detects single gene etiologies

Pediatr Rheumatol Online J. 2019 Jul 30;17(1):52. doi: 10.1186/s12969-019-0349-y.

Abstract

Background: Systemic lupus erythematosus (SLE) comprise a diverse range of clinical manifestations. To date, more than 30 single gene causes of lupus/lupus like syndromes in humans have been identified. In the clinical setting, identifying the underlying molecular diagnosis is challenging due to phenotypic and genetic heterogeneity.

Methods: We employed whole exome sequencing (WES) in patients presenting with childhood-onset lupus with severe and/or atypical presentations to identify cases that are explained by a single-gene (monogenic) cause.

Results: From January 2015 to June 2018 15 new cases of childhood-onset SLE were diagnosed in Edmond and Lily Safra Children's Hospital. By WES we identified causative mutations in four subjects in five different genes: C1QC, SLC7A7, MAN2B1, PTEN and STAT1. No molecular diagnoses were established on clinical grounds prior to genetic testing.

Conclusions: We identified a significant fraction of monogenic SLE etiologies using WES and confirm the genetic locus heterogeneity in childhood-onset lupus. These results highlight the importance of establishing a genetic diagnosis for children with severe or atypical lupus by providing accurate and early etiology-based diagnoses and improving subsequent clinical management.

Keywords: Monogenic; SLE; WES.

MeSH terms

  • Adolescent
  • Amino Acid Transport System y+L / genetics
  • Child
  • Child, Preschool
  • Complement C1q / genetics
  • Exome Sequencing / methods*
  • Female
  • Gain of Function Mutation / genetics
  • Genetic Predisposition to Disease / genetics
  • Humans
  • Lupus Erythematosus, Systemic / genetics*
  • Male
  • Mutation / genetics*
  • PTEN Phosphohydrolase / genetics
  • STAT1 Transcription Factor / genetics
  • alpha-Mannosidase / genetics

Substances

  • Amino Acid Transport System y+L
  • SLC7A7 protein, human
  • STAT1 Transcription Factor
  • STAT1 protein, human
  • Complement C1q
  • PTEN Phosphohydrolase
  • PTEN protein, human
  • alpha-Mannosidase