Simulation of heterosis in a genome-scale metabolic network provides mechanistic explanations for increased biomass production rates in hybrid plants

NPJ Syst Biol Appl. 2019 Jul 18:5:24. doi: 10.1038/s41540-019-0101-8. eCollection 2019.

Abstract

Heterosis, or hybrid vigour, is said to occur when F1 individuals exhibit increased performance for a number of traits compared to their parental lines. Improved traits can include increased size, better yield, faster development and a higher tolerance to pathogens or adverse conditions. The molecular basis for the phenomenon remains disputed, despite many decades of theorising and experimentation. In this study, we add a genetics layer to a constraint-based model of plant (Arabidopsis) primary metabolism and show that we can realistically reproduce and quantify heterosis in a highly complex trait (the rate of biomass production). The results demonstrate that additive effects coupled to the complex patterns of epistasis generated by a large metabolic network are sufficient to explain most or all the heterosis seen in typical F1 hybrids. Such models provide a simple approach to exploring and understanding heterosis and should assist in designing breeding strategies to exploit this phenomenon in the future.

Keywords: Computer modelling; Systems analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis / metabolism
  • Biomass
  • Chimera / metabolism
  • Computational Biology / methods*
  • Computer Simulation
  • Genes, Plant / genetics
  • Hybrid Vigor / genetics*
  • Hybrid Vigor / physiology*
  • Hybridization, Genetic / genetics
  • Metabolic Networks and Pathways / genetics
  • Models, Biological
  • Phenotype
  • Plant Breeding / methods
  • Quantitative Trait Loci / genetics