Circular RNA expression profiles in cisplatin-induced acute kidney injury in mice

Epigenomics. 2019 Aug;11(10):1191-1207. doi: 10.2217/epi-2018-0167. Epub 2019 Jul 24.

Abstract

Aim: This study was carried out to identify the expression profile and role of circRNAs in cisplatin-induced acute kidney injury (AKI). Materials & methods: In this study, an AKI model was established in cisplatin-treated mice, and the expression of circRNAs was profiled by next-generation sequencing. The differential expression levels of selected circRNAs were determined by quantitative real-time polymerase chain reaction. Bioinformatics analysis was conducted to predict the functions. Results: In total, 368 circRNAs were detected to be differentially expressed in response to cisplatin treatment. Bioinformatics analysis indicated that the parental genes of the differentially expressed circRNAs were predominantly implicated in the cell and cell part, cellular process and cancer pathways. Conclusion: CircRNAs might be differentially expressed in AKI, which are potentially involved in pathophysiology of cisplatin-induced nephrotoxicity.

Keywords: RNA-Seq; acute kidney injury; circular RNA; cisplatin; microRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acute Kidney Injury / chemically induced
  • Acute Kidney Injury / genetics*
  • Acute Kidney Injury / pathology
  • Animals
  • Antineoplastic Agents / toxicity*
  • Biomarkers / analysis*
  • Cisplatin / toxicity*
  • Computational Biology
  • Gene Expression Profiling*
  • High-Throughput Nucleotide Sequencing
  • Male
  • Mice
  • MicroRNAs / genetics
  • MicroRNAs / metabolism
  • RNA, Circular / genetics*
  • RNA, Circular / metabolism

Substances

  • Antineoplastic Agents
  • Biomarkers
  • MicroRNAs
  • RNA, Circular
  • Cisplatin