Novel and Improved Crystal Structures of H. influenzae, E. coli and P. aeruginosa Penicillin-Binding Protein 3 (PBP3) and N. gonorrhoeae PBP2: Toward a Better Understanding of β-Lactam Target-Mediated Resistance

J Mol Biol. 2019 Aug 23;431(18):3501-3519. doi: 10.1016/j.jmb.2019.07.010. Epub 2019 Jul 10.

Abstract

Even with the emergence of antibiotic resistance, penicillin and the wider family of β-lactams have remained the single most important family of antibiotics. The periplasmic/extra-cytoplasmic targets of penicillin are a family of enzymes with a highly conserved catalytic activity involved in the final stage of bacterial cell wall (peptidoglycan) biosynthesis. Named after their ability to bind penicillin, rather than their catalytic activity, these key targets are called penicillin-binding proteins (PBPs). Resistance is predominantly mediated by reducing the target drug concentration via β-lactamases; however, naturally transformable bacteria have also acquired target-mediated resistance by inter-species recombination. Here we focus on structural based interpretations of amino acid alterations associated with the emergence of resistance within clinical isolates and include new PBP3 structures along with new, and improved, PBP-β-lactam co-structures.

Keywords: PBP3; crystallography; penicillin binding proteins; penicillin resistance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray
  • Escherichia coli / enzymology
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Haemophilus influenzae / enzymology
  • Models, Molecular
  • Mutation
  • Neisseria gonorrhoeae / enzymology
  • Penicillin-Binding Proteins / chemistry*
  • Penicillin-Binding Proteins / genetics
  • Penicillin-Binding Proteins / metabolism
  • Peptidoglycan Glycosyltransferase / chemistry
  • Peptidoglycan Glycosyltransferase / genetics
  • Peptidoglycan Glycosyltransferase / metabolism
  • Protein Conformation
  • Protein Domains
  • Pseudomonas aeruginosa / enzymology
  • Sequence Alignment
  • Serine-Type D-Ala-D-Ala Carboxypeptidase / chemistry*
  • Serine-Type D-Ala-D-Ala Carboxypeptidase / genetics
  • Serine-Type D-Ala-D-Ala Carboxypeptidase / metabolism
  • beta-Lactam Resistance / physiology*
  • beta-Lactamases / chemistry
  • beta-Lactamases / metabolism
  • beta-Lactams / chemistry*
  • beta-Lactams / pharmacology

Substances

  • Bacterial Proteins
  • Escherichia coli Proteins
  • FtsI protein, E coli
  • Penicillin-Binding Proteins
  • beta-Lactams
  • Peptidoglycan Glycosyltransferase
  • Serine-Type D-Ala-D-Ala Carboxypeptidase
  • penicillin-binding protein 2, Neisseria gonorrhoeae
  • beta-Lactamases