An efficient isothermal PCR method for on-site detection of nucleic acid

Biotechniques. 2019 Aug;67(2):63-69. doi: 10.2144/btn-2018-0190. Epub 2019 Jun 24.

Abstract

Convective PCR (CPCR) is an isothermal nucleic acid amplification technology; however, natural convection exhibits a chaotic and multiplex flow state, resulting in low amplification efficiency and specificity. We placed a polycarbonate strip (p-strip) inside reaction tubes to induce circumfluence by blocking the inner ring that originally allowed fluid to flow at suboptimal temperatures. Moreover, we constructed a dual-temperature instrument to provide appropriate denaturing and annealing zones for CPCR. Tubes containing p-strips exhibited significantly improved efficiency, sensitivity and specificity. For real-time detection, the variation coefficients of three replicates having the same concentrations were less than 2% in more than half of the cases, indicating improved CPCR amplification and potential as a commercial on-site nucleic acid diagnosis tool.

Keywords: Rayleigh–Bénard convection; convective PCR; isothermal PCR; molecular diagnostics; point-of-care-test.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Convection
  • Coxsackievirus Infections / virology
  • Cytomegalovirus / genetics
  • Cytomegalovirus Infections / virology
  • Enterovirus / genetics
  • Equipment Design
  • Humans
  • Nucleic Acids / genetics*
  • Point-of-Care Testing* / economics
  • Polymerase Chain Reaction / economics
  • Polymerase Chain Reaction / instrumentation
  • Polymerase Chain Reaction / methods*
  • Temperature

Substances

  • Nucleic Acids