A Versatile Strategy to Reduce UGA-Selenocysteine Recoding Efficiency of the Ribosome Using CRISPR-Cas9-Viral-Like-Particles Targeting Selenocysteine-tRNA[Ser]Sec Gene

Cells. 2019 Jun 11;8(6):574. doi: 10.3390/cells8060574.

Abstract

The translation of selenoprotein mRNAs involves a non-canonical ribosomal event in which an in-frame UGA is recoded as a selenocysteine (Sec) codon instead of being read as a stop codon. The recoding machinery is centered around two dedicated RNA components: The selenocysteine insertion sequence (SECIS) located in the 3' UTR of the mRNA and the selenocysteine-tRNA (Sec-tRNA[Ser]Sec). This translational UGA-selenocysteine recoding event by the ribosome is a limiting stage of selenoprotein expression. Its efficiency is controlled by the SECIS, the Sec-tRNA[Ser]Sec and their interacting protein partners. In the present work, we used a recently developed CRISPR strategy based on murine leukemia virus-like particles (VLPs) loaded with Cas9-sgRNA ribonucleoproteins to inactivate the Sec-tRNA[Ser]Sec gene in human cell lines. We showed that these CRISPR-Cas9-VLPs were able to induce efficient genome-editing in Hek293, HepG2, HaCaT, HAP1, HeLa, and LNCaP cell lines and this caused a robust reduction of selenoprotein expression. The alteration of selenoprotein expression was the direct consequence of lower levels of Sec-tRNA[Ser]Sec and thus a decrease in translational recoding efficiency of the ribosome. This novel strategy opens many possibilities to study the impact of selenoprotein deficiency in hard-to-transfect cells, since these CRISPR-Cas9-VLPs have a wide tropism.

Keywords: CRISPR-Cas9; SECIS; Sec-tRNA[Ser]Sec; UGA-recoding; nanoblades; selenium; selenocysteine; selenoprotein; viral-like particles.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • CRISPR-Cas Systems / genetics*
  • Codon, Terminator / genetics*
  • Gene Editing
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • INDEL Mutation / genetics
  • Nucleic Acid Conformation
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA, Transfer, Amino Acid-Specific / chemistry
  • RNA, Transfer, Amino Acid-Specific / genetics*
  • Ribosomes / metabolism*
  • Selenium / metabolism
  • Selenocysteine / metabolism*
  • Selenoproteins / genetics
  • Selenoproteins / metabolism
  • Virion / metabolism*

Substances

  • Codon, Terminator
  • RNA, Messenger
  • RNA, Transfer, Amino Acid-Specific
  • Selenoproteins
  • tRNA, selenocysteine-
  • Selenocysteine
  • Selenium