Genomewide Elucidation of Drug Resistance Mechanisms for Systemically Used Antifungal Drugs Amphotericin B, Caspofungin, and Voriconazole in the Budding Yeast

Antimicrob Agents Chemother. 2019 Aug 23;63(9):e02268-18. doi: 10.1128/AAC.02268-18. Print 2019 Sep.

Abstract

There are only a few antifungal drugs used systemically in treatment, and invasive fungal infections that are resistant to these drugs are an emerging problem in health care. In this study, we performed a high-copy-number genomic DNA (gDNA) library screening to find and characterize genes that reduce susceptibility to amphotericin B, caspofungin, and voriconazole in Saccharomyces cerevisiae We identified the PDR16 and PMP3 genes for amphotericin B, the RMD9 and SWH1 genes for caspofungin, and the MRS3 and TRI1 genes for voriconazole. The deletion mutants for PDR16 and PMP3 were drug susceptible, but the other mutants had no apparent susceptibility. Quantitative-PCR analyses suggested that the corresponding drugs upregulated expression of the PDR16, PMP3, SWH1, and MRS3 genes. To further characterize these genes, we also profiled the global expression patterns of the cells after treatment with the antifungals and determined the genes and paths that were up- or downregulated. We also cloned Candida albicans homologs of the PDR16, PMP3, MRS3, and TRI1 genes and expressed them in S. cerevisiae Heterologous expression of Candida homologs also provided reduced drug susceptibility to the budding yeast cells. Our analyses suggest the involvement of new genes in antifungal drug resistance.

Keywords: amphotericin B; antifungal agents; caspofungin; drug resistance; genomics; multidrug resistance; voriconazole.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amphotericin B / pharmacology*
  • Antifungal Agents / pharmacology*
  • Candida albicans / drug effects
  • Candida albicans / genetics
  • Candida albicans / metabolism
  • Caspofungin / pharmacology*
  • Drug Resistance, Fungal / genetics
  • Microbial Sensitivity Tests
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Saccharomycetales / drug effects*
  • Saccharomycetales / genetics*
  • Saccharomycetales / metabolism
  • Voriconazole / pharmacology*

Substances

  • Antifungal Agents
  • Saccharomyces cerevisiae Proteins
  • Amphotericin B
  • Caspofungin
  • Voriconazole